Distances
Types
Functions
SeqSpace.PointCloud.Distances.euclidean
— Methodeuclidean(X)
Compute the pairwise distances between points X
according to the Euclidean metric. Assumes X
is sized $d \times N$ where $d$ and $N$ denote dimensionality and cardinality respectively.
SeqSpace.PointCloud.Distances.euclidean²
— Methodeuclidean²(X)
Compute the pairwise squared distances between points X
according to the Euclidean metric. Assumes X
is sized $d \times N$ where $d$ and $N$ denote dimensionality and cardinality respectively.
SeqSpace.PointCloud.Distances.jensen_shannon
— Methodjensen_shannon(P)
Compute the pairwise distances between probability distributions P
according to the Jensen-Shannon divergence. Assumes P
is sized $d \times N$ where $d$ and $N$ denote dimensionality and cardinality respectively.
SeqSpace.PointCloud.Distances.kullback_liebler
— Methodkullback_liebler(p, q)
Compute the pairwise distances between probability distributions p
and q
according to the Kullback-Liebler divergence. Assumes p
and q
are normalized.